1. Introduction 1.1 Background and Importance 1.2 Scope and Objectives 1.3 Structure of the Study 2. Microbiome Overview 2.1 Definition and Components 2.2 Human Microbiome Diversity 2.3 Methods of Microbiome Analysis 3. Metabolites in the Microbiome 3.1 Metabolite Classification 3.2 Biosynthesis Pathways 3.3 Analytical Techniques 4. Immune System Basics 4.1 Innate and Adaptive Immunity 4.2 Immune System Components 4.3 Immune Response Mechanisms 5. Interaction Between Microbiome and Immunity 5.1 Symbiotic Relationships 5.2 Immunomodulatory Metabolites 5.3 Impact on Pathogen Resistance 6. Microbiome-Derived Metabolites 6.1 Short-Chain Fatty Acids 6.2 Polyphenols and Derivatives 6.3 Amino Acid Metabolites 7. Mechanisms of Immune Regulation 7.1 Modulation of Cytokine Production 7.2 T Cell Differentiation 7.3 Metabolic Pathway Interactions 8. Therapeutic Implications and Future Directions 8.1 Microbiome-Based Therapies 8.2 Personalized Medicine Approaches 8.3 Future Research Opportunities
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